PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009130819.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 359aa    MW: 39554 Da    PI: 7.325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009130819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00042150172123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  XP_009130819.1 150 YQCKTCDRTFPSFQALGGHRASH 172
                     9***********99999998887 PP

2zf-C2H213.10.00028224246123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  XP_009130819.1 224 HECGICGAEFTSGQALGGHMRRH 246
                     78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-12149174IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-8149172No hitNo description
PROSITE profilePS5015710.388150177IPR007087Zinc finger, C2H2
SMARTSM003550.028150172IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
SuperFamilySSF576671.07E-8219246No hitNo description
Gene3DG3DSA:3.30.160.607.2E-4222248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.3E-11223248IPR007087Zinc finger, C2H2
SMARTSM003550.047224246IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93224248IPR007087Zinc finger, C2H2
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MEAFEEAIAA SKEQALILKG KRTKRQRPQS PIPFSVSPPI VEEEVSNVLD SKENDVANRK  60
KDGVITSSSS SASWSSNNNP TLKAEEDEED QDIANCLILL SQGHSFPQHN QQLKIPHQEI  120
NNNNTYRFSS RRFLETSSSN GGGKSGYYVY QCKTCDRTFP SFQALGGHRA SHKKPRATSF  180
YSNLDVKKSI YENDAASLTN IYNNKNNNNR SLVAYGKAGN NKVHECGICG AEFTSGQALG  240
GHMRRHRGAV VVAAAPAPIV TVAAAAANTE LSLSSMSYDQ ISEGQDHLVM PEAKKAKKMV  300
VSLDLDLNLP APEDENRVNG LSLTLKQKHE QEQEHQQTKQ REEQVSLVLS APTLVDCYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130819.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLM4CNL50.0M4CNL5_BRARP; Uncharacterized protein
STRINGBra005803.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-138C2H2 family protein